{
  "_id": "6a1f097db401979e7341c399",
  "Package": "jointCompRisk",
  "Type": "Package",
  "Title": "Joint Inference for Competing Risks Data Using Multiple\nEndpoints",
  "Version": "0.1.0",
  "Authors@R": "c(\nperson(\"Wenqing\", \"Zhang\", email = \"wzhan115@jhu.edu\", role = c(\"aut\", \"cre\")),\nperson(\"Jiyang\", \"Wen\", role = \"aut\"),\nperson(\"Chen\", \"Hu\", role = \"aut\"),\nperson(\"Meicheng\", \"Wang\", role = \"aut\")\n)",
  "Maintainer": "Wenqing Zhang <wzhan115@jhu.edu>",
  "Description": "Tools for competing risks trials that allow simultaneous\ninference on recovery and mortality endpoints. Provides data\npreparation helpers, standard cumulative incidence estimators\n(restricted mean time gained/lost), and severity weighted\nextensions that integrate longitudinal ordinal outcomes to\nsummarise treatment benefit. Methods follow Wen, Hu, and Wang\n(2023) Biometrics 79(3):1635-1645 <doi:10.1111/biom.13752>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "false",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "URL": "https://github.com/cathyzzzhang/jointCompRisk",
  "BugReports": "https://github.com/cathyzzzhang/jointCompRisk/issues",
  "Repository": "https://cathyzzzhang.r-universe.dev",
  "Date/Publication": "2025-10-20 01:36:49 UTC",
  "RemoteUrl": "https://github.com/cathyzzzhang/jointcomprisk",
  "RemoteRef": "HEAD",
  "RemoteSha": "199273c90d58982d88476e9256b7cb86f5439c89",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-18 06:01:53 UTC",
    "User": "root"
  },
  "Author": "Wenqing Zhang [aut, cre],\nJiyang Wen [aut],\nChen Hu [aut],\nMeicheng Wang [aut]",
  "MD5sum": "6c26b1884b7a4569ef3ed3e5c7efab3e",
  "_user": "cathyzzzhang",
  "_type": "src",
  "_file": "jointCompRisk_0.1.0.tar.gz",
  "_fileid": "ee1818df662f33cd84ac98d0e489a307f7274bf7094afeb55abc04dd814d12c7",
  "_filesize": 149371,
  "_sha256": "ee1818df662f33cd84ac98d0e489a307f7274bf7094afeb55abc04dd814d12c7",
  "_created": "2026-05-18T06:01:53.000Z",
  "_published": "2026-06-02T16:49:01.856Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79124576855,
      "time": 143,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7050577214"
    },
    {
      "job": 79124577078,
      "time": 140,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7050576833"
    },
    {
      "job": 79124576780,
      "time": 206,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7050576351"
    },
    {
      "job": 79124577151,
      "time": 164,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7050575475"
    },
    {
      "job": 79124576253,
      "time": 240,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7050548469"
    },
    {
      "job": 79124576013,
      "time": 95,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7364225558"
    },
    {
      "job": 79124576878,
      "time": 100,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7050568434"
    },
    {
      "job": 79124576948,
      "time": 98,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7050568254"
    },
    {
      "job": 79124577072,
      "time": 121,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7050572538"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cathyzzzhang/jointcomprisk",
  "_commit": {
    "id": "199273c90d58982d88476e9256b7cb86f5439c89",
    "author": "cathyzzzhang <wzhan115@jh.edu>",
    "committer": "cathyzzzhang <wzhan115@jh.edu>",
    "message": "updated Oct 19\n",
    "time": 1760924209
  },
  "_maintainer": {
    "name": "Wenqing Zhang",
    "email": "wzhan115@jhu.edu",
    "login": "cathyzzzhang",
    "description": "",
    "uuid": 101492080
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "readr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cathyzzzhang",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-26",
      "n": 2
    },
    {
      "week": "2025-27",
      "n": 3
    },
    {
      "week": "2025-37",
      "n": 4
    },
    {
      "week": "2025-41",
      "n": 2
    },
    {
      "week": "2025-42",
      "n": 1
    },
    {
      "week": "2025-43",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "cathyzzzhang",
      "count": 19,
      "uuid": 101492080
    }
  ],
  "_userbio": {
    "uuid": 101492080,
    "type": "user",
    "name": "cathyzzzhang"
  },
  "_downloads": {
    "count": 164,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/jointCompRisk"
  },
  "_devurl": "https://github.com/cathyzzzhang/jointcomprisk",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/jointCompRisk.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/cathyzzzhang/jointcomprisk",
  "_realowner": "cathyzzzhang",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2025-10-14"
    },
    {
      "version": "0.1.1",
      "date": "2025-10-20"
    }
  ],
  "_exports": [
    "%>%",
    "do_cif_analysis",
    "do_weighted_cif_analysis",
    "prep_data_cif",
    "prep_data_weighted_cif",
    "prep_data_weighted_cif2"
  ],
  "_datasets": [
    {
      "name": "long_df",
      "title": "Longitudinal Severity Scores Dataset",
      "object": "long_df",
      "file": "long_df.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "PersonID",
        "OrdinalScore",
        "RelativeDay"
      ],
      "rows": 278,
      "table": true,
      "tojson": true
    },
    {
      "name": "main_df",
      "title": "Main Competing Risks Dataset Simulated clinical trial data with competing risks survival outcomes. This dataset follows the structure of Adaptive COVID-19 Treatment Trials (ACTT) with built-in treatment effects for demonstration purposes.",
      "object": "main_df",
      "file": "main_df.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "TimeToRecovery",
        "TimeToDeath",
        "RecoveryCensoringIndicator",
        "DeathCensoringIndicator",
        "BaselineScore",
        "Treatment"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "do_cif_analysis",
      "title": "Run Standard CIF Analysis",
      "topics": [
        "do_cif_analysis"
      ]
    },
    {
      "page": "do_weighted_cif_analysis",
      "title": "Run Weighted CIF Analysis",
      "topics": [
        "do_weighted_cif_analysis"
      ]
    },
    {
      "page": "long_df",
      "title": "Longitudinal Severity Scores Dataset",
      "topics": [
        "long_df"
      ]
    },
    {
      "page": "main_df",
      "title": "Main Competing Risks Dataset Simulated clinical trial data with competing risks survival outcomes. This dataset follows the structure of Adaptive COVID-19 Treatment Trials (ACTT) with built-in treatment effects for demonstration purposes.",
      "topics": [
        "main_df"
      ]
    },
    {
      "page": "prep_data_cif",
      "title": "Prepare Data for Standard CIF",
      "topics": [
        "prep_data_cif"
      ]
    },
    {
      "page": "prep_data_weighted_cif",
      "title": "Prepare Data for Weighted CIF (Legacy Wrapper)",
      "topics": [
        "prep_data_weighted_cif"
      ]
    },
    {
      "page": "prep_data_weighted_cif2",
      "title": "Prepare Data for Weighted CIF",
      "topics": [
        "prep_data_weighted_cif2"
      ]
    }
  ],
  "_readme": "https://github.com/cathyzzzhang/jointcomprisk/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "survival",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "Vignette.Rmd",
      "filename": "Vignette.html",
      "title": "Competing Risks Survival Analysis with jointCompRisk",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Clinical Applications and Rationale",
        "Theoretical Background",
        "Cumulative Incidence Functions",
        "Restricted Mean Survival Time",
        "Endpoint-Specific Restricted Mean Times",
        "Installation and Data Requirements",
        "Load the sample data",
        "Data Structure Requirements",
        "For standard CIF analysis: your dataset needs:",
        "For Severity-Weighted CIF Analysis, your dataset needs:",
        "Part 1: Standard CIF Analysis:",
        "Step 1: Data preparation",
        "Step 2: Analysis",
        "Step 3: Result Interpretation",
        "Part 2: Weighted CIF Analysis:",
        "Step 1: Data Preparation"
      ],
      "created": "2025-06-29 18:26:18",
      "modified": "2025-10-20 01:36:49",
      "commits": 7
    },
    {
      "source": "Example_analysis.Rmd",
      "filename": "Example_analysis.html",
      "title": "Example Analysis using jointCompRisk",
      "author": "Wenqing Zhang",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Part I: CIF Inference"
      ],
      "created": "2025-01-06 23:03:28",
      "modified": "2025-10-08 19:03:59",
      "commits": 6
    }
  ],
  "_score": 4.778151250383644,
  "_indexed": true,
  "_nocasepkg": "jointcomprisk",
  "_universes": [
    "cathyzzzhang"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-18T06:03:58.000Z",
      "distro": "noble",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "d02a93cd39d1037b5ea794bee3720e7d1f8a0658e2a622b241b550631a5e44d7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-18T06:03:56.000Z",
      "distro": "noble",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "727085b321c9fc2e13d5dccdb024eb79b58949f26f04bd519fb0677e8658ecc1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-18T06:04:05.000Z",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "4bda0a2684698fe9752b50440454ae2e40098c841e24b50982dca6991947bf6f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-18T06:03:56.000Z",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "4a172965f1bc99a5f41f9f03695524cdbeb3bca7b9bbcb6066fd37b94a8665f2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-18T06:03:15.000Z",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "02635363d94946e481efaab833cd9106ec0e355464e8446347d357f40b3cba37",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-18T06:03:07.000Z",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "358f138d835782a8d1422000534f1243ed726fbb01a0877885b177e2c048c1e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-18T06:03:26.000Z",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "e648893a144952e2ef6e7a1d911d771cc6ccb62ff2c6b040d586abe582f823ad",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-02T16:48:45.000Z",
      "commit": "199273c90d58982d88476e9256b7cb86f5439c89",
      "fileid": "21c7754a6dfbabf1e5ed4fb66a96c011c30a4665b43022fd8ef6dc8ec5b3178f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cathyzzzhang/actions/runs/26016261047"
    }
  ]
}